NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326721_10003046

Scaffold Ga0326721_10003046


Overview

Basic Information
Taxon OID3300032080 Open in IMG/M
Scaffold IDGa0326721_10003046 Open in IMG/M
Source Dataset NameSoil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5521
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Marine Airborne Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)36.36Long. (o)-97.29Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001042Metagenome / Metatranscriptome794Y

Sequences

Protein IDFamilyRBSSequence
Ga0326721_100030462F001042AGGCGGMTTSHLIGGNEASNVPKDFEADTDDKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDVHLAQDSISNKNDAARRDFTEKSSLLLESYQEDVPKLLGKAESCLGEAIDLINLIVSASEAEVNNG

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