Scaffold Ga0326721_10000827

Overview

Basic Information

• Taxon OID: 3300032080
• Scaffold ID: Ga0326721_10000827
• Source Dataset Name: Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9536
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Marine Airborne Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Oklahoma
• Coordinates
  • Lat. (^o): 36.36
  • Long. (^o): -97.29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001042	Metagenome / Metatranscriptome	794	Y
F007252	Metagenome / Metatranscriptome	354	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326721_1000082710	F001042	AGGCGG	MTTSHFIGGNFVSDFPKDSEAEADDKIVIDKLLINKLTELLINSIYSVHISRRSEIFLTSLDMHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLGKAESSLEEAIDLINLIVSASEAEGENG
Ga0326721_100008278	F007252	AGTAG	MNNKVHPFFEDVTLWDFNMKKSKGKSKCGRGGARPGAGGGCRWKHGRTKLVRLPVALLDEILEVARYMDQNEGRLPPSAPPVIISGHLSESLSGEELKEFLAKKKARKLAEKVMCGDERVVVSDKTFAVFDIFDVPPAQKARSSSR