NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306924_10696411

Scaffold Ga0306924_10696411


Overview

Basic Information
Taxon OID3300032076 Open in IMG/M
Scaffold IDGa0306924_10696411 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1141
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002127Metagenome / Metatranscriptome591Y
F002394Metagenome / Metatranscriptome564Y

Sequences

Protein IDFamilyRBSSequence
Ga0306924_106964111F002394GGAGGMSHQFEDLDATERAGIEAALNRCRALAAQIMSELRNERPEHFVDKLSLA
Ga0306924_106964112F002127N/AKVDLRKLLQKVEAAPSGSPELDSEFESTFRFAPPHVTRSIDAAAWLIETELPGWWWDCRHVVLRNGASLYVPGSSQIQVDFPNAKIPPDFEPRPEHLRLLQDPKWGKVFNRGFHCDRGGGTIPLAMLSVFLQAKIALILVQPEASANKASPQLAAPHGRLQ
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