Basic Information | |
---|---|
Taxon OID | 3300032076 Open in IMG/M |
Scaffold ID | Ga0306924_10003027 Open in IMG/M |
Source Dataset Name | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 16039 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Puerto Rico: Rio Grande | |||||||
Coordinates | Lat. (o) | 18.321 | Long. (o) | -65.8172 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F072962 | Metagenome | 120 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0306924_1000302711 | F072962 | GGAG | MKRQVLMTLAAFWGLIAVGAPTARAQAEIDPDHFEAPNMEPFDKVKTSSNVGTIRYDGKFRLAHAVQCNGKSLRPGRYSVSLRYDGKVARATLNRDGQTIGIGGVVHRHAHRQGNDALIVELQGTTRRLSAIQVAKLDFVLDPEPRIKNSTHGEPGRLERLPLTETVREPQAPPKS |
⦗Top⦘ |