Scaffold Ga0308173_10103182

Overview

Basic Information

• Taxon OID: 3300032074
• Scaffold ID: Ga0308173_10103182
• Source Dataset Name: Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2222
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Leaf Surface Microbial Communities From Various Plants In Uc Gill Tract Community Farm, Albany, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 37.8864
  • Long. (^o): -122.2981

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030254	Metagenome / Metatranscriptome	186	Y
F031230	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308173_101031822	F030254	AGGAGG	MNHAFFALTAVGLAGLSGIGISAQTKPIQTAQLVTTAPDYSREAGVFSQWLNPGAPQCVAVSKISSVSRVTKLTPQQFEFVRALYIAIPPMSRQLPPGDSAVVASADGRSMIALVSGGETCARFLAPDFVLSMLSEVGKGETEAIGTPI
Ga0308173_101031823	F031230	GGAGG	MKHALTGLLLAGTSFAFVAGTPAAAQVAGNPGDLHTPTVYTTEVHANTYGYSPGYGGPIGPLGAIAAPITAPVAMAAGGEPRGGACGVNQDFNGRLTALCGL