Scaffold Ga0315315_11105186

Overview

Basic Information

• Taxon OID: 3300032073
• Scaffold ID: Ga0315315_11105186
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 706
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Haifavirus → Haifavirus tim68 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006662	Metagenome / Metatranscriptome	367	Y
F036739	Metagenome	169	Y
F047121	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_111051861	F036739	AGGAGG	MITPISPLVVNKYKRRSFPQKVTQIGVNLWKKYIKRFINVILNITKRFISSLKSVINRMFWWF
Ga0315315_111051863	F006662	GAGG	VRTLTAKEYEVISDIYNSIDEVEANLSFQFGIQNDTYYQLFHSYTETKKEVN
Ga0315315_111051864	F047121	N/A	DRDVQKLRDLIKKCEELEVNNTNFNNSVHFENQINQSRYYK