Scaffold Ga0315315_10468953

Overview

Basic Information

• Taxon OID: 3300032073
• Scaffold ID: Ga0315315_10468953
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1168
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_104689531	F006383	GGAGG	MHDKMWAVQQPGTLLRGRSSHQYGKLALVLEEAYAGPTPSNGYPPRQYVKMQWVATGERFEEMLTNAHNCFDIVSSCDTLGPEEN
Ga0315315_104689532	F021674	GGAG	MERETYNTRLKTNPEDIPVGSLLRCKKHCRKNVTIIQNGEYGLLVTTINKGKYITHDVVFPNGTRCIYMPLNWEVVSYAR
Ga0315315_104689533	F015346	GAG	MEHKLYNVGELVAVASNRVLGIITRSNYWALDEYLGGEIEFVDVMFGSSVSKQYPVRYLAEL