Scaffold Ga0315315_10259830

Overview

Basic Information

• Taxon OID: 3300032073
• Scaffold ID: Ga0315315_10259830
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1619
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019151	Metagenome	231	Y
F054095	Metagenome	140	N
F095345	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_102598302	F054095	N/A	MIPQWKMNGKDMRFDGSIEVGVVEVRDLFDDLVVTLWVEQEKDNTLTVKSLGGIGNGRYSVQVLPRKKPIEEGEEWKS
Ga0315315_102598303	F095345	AGGA	MSDLRIIKEKGFYDQHGNKKFALLEEGQTVKIESHPRSGSGPLLCRVVNPSEASKDFGVRDGMLVEVDWDFLGLEL
Ga0315315_102598305	F019151	AGGA	MIVANERAKDGLELFNNDGVQAFEMKNETLKMCADEDGKLWNSVRGLDLFNADGNLVFSLSWSETGVCGTLHDEELTLEITEEF