Scaffold Ga0315315_10159170

Overview

Basic Information

• Taxon OID: 3300032073
• Scaffold ID: Ga0315315_10159170
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2108
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038862	Metagenome	165	N
F050749	Metagenome	145	N
F066148	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_101591701	F050749	AGGAG	MLESRFLDKAAATELLSNNWHKNRKIHRGVKDQHVKDLAAKITQGRWVVDAMETPILIDTDGILYNGQNRCMAVILADQGVLVQCRIESPEECQRLYASLDLGKARTIADITGLNQSNIVQPILYLMRCAGLDGRLKDEAAVSRIADTYIGDILRHFDQNTRWVKNNRCFNSVQFKAAMAYCVHRRVLPDYEAVSVLEMLQNNKDYHWPSMYLNYREQIMFPNGKLNTGGKTVANDKFCRSVYLIERRMKHQSKIQISSGFLDDLASNVRRVIREAAAE
Ga0315315_101591703	F038862	GGAG	MSDKAWHISYLSAIVGPCAATTDDGCMAWEDAEKSDFVMRLLDRDNDGKNLLLVIQPEMNELAIYTLTGYCVANDLPYMIKDWDTLSAEGQKEAQKTRH
Ga0315315_101591705	F066148	AGGAGG	MSNHLSEVAEGIIEACPTQLNPDEMSTLIAYMIWSYGMQGDWDDMLPKIVRCINLDDGHARIVRVANRDANKFLDK