Scaffold Ga0315315_10144519

Overview

Basic Information

• Taxon OID: 3300032073
• Scaffold ID: Ga0315315_10144519
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2218
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039871	Metagenome / Metatranscriptome	163	Y
F049292	Metagenome	147	Y
F086306	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_101445192	F086306	AGG	MIEPFVPIFVAVGTGFAVLTSRIYSRIAHLDNKVDKIELRIVQEYVTKGDFNNALTRMEGHLIRMEDKLDAIASNKCK
Ga0315315_101445194	F049292	N/A	MIELAVGPVLALLISLKFTQQQNTKHQKEYEALVTKVELLETRNEQVDKEMLQKIMTTVMPIAKAVNKLNQEVGL
Ga0315315_101445195	F039871	AGTAGG	VRIDLRKFFEAYEGTPHQLAAIDQLADGIPDELLDKFSDWVVCFEVDGEVQPLVEYSHKGYIMKEPWRYT