Scaffold Ga0315315_10064025

Overview

Basic Information

• Taxon OID: 3300032073
• Scaffold ID: Ga0315315_10064025
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3404
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029108	Metagenome / Metatranscriptome	189	Y
F034927	Metagenome	173	Y
F068602	Metagenome / Metatranscriptome	124	Y
F072343	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_1006402512	F034927	N/A	MKLNIFKLPEQWTDAEIEHLYDTNWNITLEQLSLLTNRTIQQLKTLLLPN
Ga0315315_100640252	F068602	AGGAG	MEDDDPHAEEMLEKSLFIVETLAKDIHLYSDEQIQDVMMMQQSMEFQLKQNNTNKAIIECRNLYNYISEITK
Ga0315315_100640253	F072343	N/A	MHTRREIDHILDDINKIIANKKTSNKEKEDDKAMLEHLYATINLKTDNGKRAKGMWTESPEFINN
Ga0315315_100640259	F029108	N/A	MKQINPRKYIVGKKKSGRGKVGAKGGVATKTGAFGGKSKFNKKRLDKNE