Scaffold Ga0315315_10051922

Overview

Basic Information

• Taxon OID: 3300032073
• Scaffold ID: Ga0315315_10051922
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3797
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032042	Metagenome	181	N
F033958	Metagenome	176	N
F040865	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_1005192211	F032042	AGGAG	MNKLHFNIGDRVMSRWGEAKIVRMDITSFGEPKYGDSVSNVPVDYNGPWIADLDNGHWAYGSQISLMEGHNQYA
Ga0315315_100519222	F040865	GGAGG	MHYELDIMAIDGPVFSGSFKSIYPMAEKIVRHLGTSFAVGSGYAVSSDGVCTANIEGCTWTDIRDAIRDMESQEESYNESVNVEPAF
Ga0315315_100519228	F033958	GAGG	MEALSRKLEFNNKGQVVFTFGDNWSLSVINNGYGASEGLFEIAPMADDEIQYVEGISTEFDNVRGWLTEDEVFEYVDKMAEITDHPAKHNDSSLPYW