Scaffold Ga0315315_10046186

Overview

Basic Information

• Taxon OID: 3300032073
• Scaffold ID: Ga0315315_10046186
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4040
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033836	Metagenome	176	Y
F038272	Metagenome	166	Y
F066845	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_1004618610	F066845	AGGAG	MMNNKQIAIAKHNASKKRFADIFTGCLSAGTLKQTQKKKKTFKLPKNK
Ga0315315_100461864	F038272	GGA	MTKNEAKLELFKTDRQIEKKIVEHANELGQHNKNCVEQELQLLWDRKDILKNIINS
Ga0315315_100461867	F033836	N/A	MTISEYEFFGVSNNAYAKNTRNTVGKGIPTDRKQEERTNKEERYIDMVRETEVKAAALCTLALLAGLCCALLLGCSTSAKVEGGAEIIELKPLKMQELTYPAYDYNKICADCGFSEWTDSWCEAHMGEAAFCSASK