Scaffold Ga0315315_10028500

Overview

Basic Information

• Taxon OID: 3300032073
• Scaffold ID: Ga0315315_10028500
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5183
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012400	Metagenome	281	Y
F024571	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_100285006	F012400	AGGAG	VKTKLTIKKFMGDDSCSWAVFRAADVKGMRSPICDPWIRPVMSGLTRADAQYHKKSLEAK
Ga0315315_100285007	F024571	AGGAG	MEADFNVDVIDNETGEIYREGVLLAAAHIFIAKENGKIVKQEVNTVHLDDIDGGGEIQVHDIYVDFPEEKLKRELSADAIIRAREFWQYEKGGGQVRK