NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315315_10026338

Scaffold Ga0315315_10026338


Overview

Basic Information
Taxon OID3300032073 Open in IMG/M
Scaffold IDGa0315315_10026338 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5391
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023845Metagenome208Y
F041145Metagenome160N
F044427Metagenome154N
F059445Metagenome134Y
F098210Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0315315_1002633811F044427N/AMGKLKYSKEIKQLRKVLNDHDYTRTLSPGYHQYLSDMHRKMVSHDNLPPKTEKNINQAFNYYENHNRADVKANRERMLAKITKLKTLLLQCGYSPMYESEKMNFLDSITSRVHIKGNLTPKQAKYANGMYKQFSKKVKENA
Ga0315315_100263385F098210N/AMVTLPLPNKITIGRENWVRMMYCMKHLMKLHPEYYDMIKPFYDQMYDKYPYNEQDPFNFEDDYKVRPKTSIERELDKLADLNSKEKKEQKQIFESQLNQLVWDLGLKLPSWDNKDKGNKD
Ga0315315_100263386F059445N/AMKLQDIVDSLIELSTHEMPEEALKSLDDAIDHIVSNMTEQELHGVLGKTMIDEIKDLANFNPKHVWKEDGDEEEIKAIKSMMDGNIAIA
Ga0315315_100263387F041145GAGGLSKPANIKHDNLVKKLEMLVKLCEETEPTPKQLLKMSGEKNTNVTDLFTPEMIDAQFYLQEVKAEDYDSYSIIDTMKACNTIWRWRMKVKKEGWPNMSSIEYICGEFIKKNQKIAAIKKYRQYMIDRDKEVSLKEAKEWVDRLSIKMDLD
Ga0315315_100263388F023845N/AMSLLTYYKSTHDEIEKLIEDHVEECRKNIPWGGEHRVVVKKIIDIFKRTH
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