Scaffold Ga0315315_10025836

Overview

Basic Information

• Taxon OID: 3300032073
• Scaffold ID: Ga0315315_10025836
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5444
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F008590	Metagenome	331	Y
F012507	Metagenome	280	Y
F019158	Metagenome	231	Y
F094548	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_1002583612	F008590	AGG	MKVGDLVTYWYQRPRWRKGQSVHVGLVIETGKFSGNRDVKVLWKGEPDSQTECSQHLSLVDKSLTP
Ga0315315_1002583615	F094548	AGGAG	MIKVGSMVQSKYVLSSGKEGNLGLVMDLRNTGGTFGGVVEAGDALAHVYYPK
Ga0315315_100258363	F012507	N/A	MWTDELKIGDLLCSRQDGKPAIILDSAETARTKYGDLANKRMEFKLHVDGQQGWLDEVKLRALYKIP
Ga0315315_100258365	F019158	AGAAGG	MKMTLVIDTDDREGINDALKMVRIMHAKYSGNATAHKESFGKIEFIKLLRKFMKESVAHLKDEEDNQVRDINDMYNLRNAKRFADRIFSGER
Ga0315315_100258366	F004771	N/A	MKRIKKGDLVRMHTHDTGLVGIVVDRHPKAISTTRPQIGIMWIGGSGKVDWEPETWLEVVSES