Scaffold Ga0315315_10007084

Overview

Basic Information

• Taxon OID: 3300032073
• Scaffold ID: Ga0315315_10007084
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10379
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (65.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F005019	Metagenome	415	Y
F008307	Metagenome / Metatranscriptome	335	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_1000708416	F002495	GGAGG	MQNNGSGKQKDWVLFPYDANNEKAIKIDFSGNVNLDNGNKGTILGVKGSSKDGNTKFVKVYAQVGVLFKGDDKFTGEMNYSEAGGHKGLIGWLNDQGTILSGYKNEPRPKQDSQPKKTTSSFQI
Ga0315315_1000708420	F008307	AGCAG	MTKVKKTSTIELAADFEEIFDGANVEEATKKAHNQKMPSEFAKVNITEHKLVSANIKVIGEVNDELKK
Ga0315315_100070849	F005019	N/A	MNIYGDYRICCKCQMKADVVERGKNFCADCWFKYFSGETLEQYEKKIKQLDELRKDKK