Scaffold Ga0315315_10006194

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315315_10006194

Scaffold Ga0315315_10006194

Overview

Basic Information
Taxon OID	3300032073 Open in IMG/M
Scaffold ID	Ga0315315_10006194 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11046
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (93.10%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)		Depth (m)	40
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071137	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315315_1000619417	F071137	GGAG	MGADFTLATFPYFDMTEDRRERFRELIVNLPASETDEFQEWYGLDEEDYSLEQLLEDIESSCSTVSRETTTITTYSDKGERYELNVTGGMTWGDSPTDAYDAFNRAAFFESVYNLAVDFSVEYSKMYT

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