Scaffold Ga0326631_100719

Overview

Basic Information

• Taxon OID: 3300032072
• Scaffold ID: Ga0326631_100719
• Source Dataset Name: Soil microbial communities from Bohemian Forest, Czech Republic ? CSI2 metaT (Metagenome Metatranscriptome) (v2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1409
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.044
  • Long. (^o): 13.617

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003193	Metagenome / Metatranscriptome	501	Y
F088107	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326631_1007192	F088107	N/A	MSFSPAGNLLSNLPQSTVKFYDKKFRENLKSQTPFVACAERLNLPTNSGNQYEMFMYVPLAANTNQTTEGTVGSSLSVSVLTTTATIGEYADYANFSSLSLATAIDNTVENVAKEMSTALASHCLP
Ga0326631_1007193	F003193	N/A	VLTQLAATSTSSFTALSLSQIRNSVQSLAGRAVRPFDEASKSFVGVIHPFALGDVLADNSNDSPIDILKHTPVGQARMDELVSVDLTEVIDLPSSGVQFFQTNLVTQSNNYKSVAGLVALRTYIFGRDGVFAINLGAKGDTGYGDGEWRNIECNIMQNVAPTVADPEGLIPGWTSYRVHFTTSLGP