Scaffold Ga0315279_10383279

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315279_10383279

Scaffold Ga0315279_10383279

Overview

Basic Information
Taxon OID	3300032070 Open in IMG/M
Scaffold ID	Ga0315279_10383279 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	973
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5094	Long. (^o)	-110.5094	Alt. (m)		Depth (m)	88
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032324	Metagenome	180	Y
F042956	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315279_103832792	F042956	GAGG	MRVILEPVSGTAEENLDRAKVEITRVLDFRGSVTGVKAKGTRIIVEFDINPKWDLPMSEKVSYLQEWIPAKVRKVFEVHEVSPRVIQSRKG
Ga0315279_103832793	F032324	AGAAG	MRQPYEQNIDQNYKPELTYEECLRIVKGLEAVRKCHLTNSPIVERAARLMQCNKIHHLPSLNLLIEDTAAKVLGNVAQSSAIVGHPKLVP

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