Scaffold Ga0315279_10020586

Overview

Basic Information

• Taxon OID: 3300032070
• Scaffold ID: Ga0315279_10020586
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7031
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5094
  • Long. (^o): -110.5094
  • Depth (m): 88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043204	Metagenome	156	Y
F048728	Metagenome	147	N
F098366	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315279_1002058611	F043204	GGAG	MATSAETQVAKYEALLATSAGLDSVMMDGQSVRYVDLEAKCRRLKREVARQAGTRPQASSINLGGF
Ga0315279_100205862	F098366	AGGAGG	MITRKQAEEVLPHVRAAVAALHEVWNECRHVERALGHDIDGLEGVVRDMAAGVDDPESIDVDYVRDAINAQADELVAEADACPKCRERNVDNLVWQDNGKVKCTTCGKQYAPPSK
Ga0315279_100205863	F048728	AGGAG	MKTTQKTVEGAKGWANIARREVAGKVVISIHGDGAAGLFDFNADTRDERSQQYAAARLQRELDGYQGTAGDVADYLRAIQNFAD