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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032070 Open in IMG/M |
| Scaffold ID | Ga0315279_10000013 Open in IMG/M |
| Source Dataset Name | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 429985 |
| Total Scaffold Genes | 483 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 385 (79.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5094 | Long. (o) | -110.5094 | Alt. (m) | Depth (m) | 88 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013170 | Metagenome | 273 | Y |
| F017852 | Metagenome / Metatranscriptome | 238 | Y |
| F038000 | Metagenome | 167 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315279_1000001313 | F038000 | GGA | MGDHRCENCGKTFYTRYVQYIDKCLCPECRSKSEATKKEKELGEAKEYWEARKKEVRDF |
| Ga0315279_10000013400 | F013170 | GGA | MSVHLHTTITKKTDDLIEELTKTYGTKNRVIEQAMETLLRVERVGSCEDCVVKAKMKEQINLREALDLMSIGRKAIDSLLEVAIGDKTIQEFIAEQKEEAKNTIEVLRGSVAWEKPSNFREFMIILEEMKDLTRIFEIGSHSEIDNTAILRPNVFKRLPEIVAFQVSTILEGLQVSFEMRVMGEDVAVKMTRQDMYPLGKKEFGGSLSEQIERRLSSSTPSLFRNTLMLVGPAFMNWAEKHLEEPVADLGSFLEDLRIALGTGELPKDPKEFVKSLLSAFIKMNWFKQAKILREVDEKTLDVSFQSTIPSVAKLSIVMLSVVLATRGWKLLRFSVEQTTANVSIQYVGPEDQSLLDQIVEVSLFQTIGKQFLDVVPVPREVYNSFASKIYDTNKEKFDETYRTMGVRVSNAIRMLARNDPEKIRKLAQNFILKNVGSAQPDAEMRFVDDEHFTIIFKKVDQLVMSSQRTLIESMFKELGYEIQTTAFQNLLSFKLRALEKPALEPVPRKKLMDALISEMSSSSCDEAFAITKEPIDEMFPEDYPWTIREVGDRLVDMYRELNVEVEIEYFEGGFTLKYTTCPYYKLVKSGQKTWLCSLRKKQLDYAISRVSHGKKAKIKIIRSLLKNEHPCEYAIFLTGFLEEE |
| Ga0315279_1000001390 | F017852 | GAG | MTLALPTKLGGLEKKHGVKRLGAWTVVPEHLLIWVYEAPSSDALQEFSMEPEMVKWMAWNTSEIKLAMNLEESMKLLK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |