Scaffold Ga0315282_10056851

Overview

Basic Information

• Taxon OID: 3300032069
• Scaffold ID: Ga0315282_10056851
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4115
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3581
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010661	Metagenome	300	Y
F016487	Metagenome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315282_100568512	F010661	GAGG	MAKSNGIASANDFRKLAEDSAFEEPSRLVLPKSGFGVVLRRPTKFYWALRRSEWPRELREKLDLVGVGVRPELTADETLLLVREDQQMLNEAFVDPKPSLNPGLTQFDPNWLPKEDAEFILKYLRGQVLANGQDLDAFRPSEQGHPAGSGTDGALVREDPERDVIPRRGCMAS
Ga0315282_100568515	F016487	N/A	LIPGNQTWQLALAQLQKQAFYTVEIPDFAIAIASFTAKMQVATLPSGYGIMLYGVGLYGN