Scaffold Ga0315282_10008817

Overview

Basic Information

• Taxon OID: 3300032069
• Scaffold ID: Ga0315282_10008817
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16221
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3581
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007097	Metagenome / Metatranscriptome	357	Y
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F016487	Metagenome	246	Y
F042698	Metagenome	157	Y
F083583	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315282_1000881711	F008672	AGG	MWVPYYNAGLSKQVVRQLLAVIKRDIQAALDFVSGVPGSYAPFAEYDLALLPVEQFPALLLTPDVVSFDEEANATLHQSLRLTCALALAHQERNTLAEMTQDYVRAVRAVLDTFWESSPGDFLLTTLPLPSPPFPNGALSPGLASGKLMKIFVDGHTFEEIRRGAQSGFVMAATMSIIVEIEET
Ga0315282_1000881712	F011724	GAG	MSYCTVDDVCTAFPRFVRNTPNSIQDTQIQDWIDDRKARIRSAFYARAIDPDALELTPDQANFLRALNRDGAIADLGDALQGNVSLQPGEYSQAAERRASFERQIAEIKQGLYDKFFSPLARTVEIEPTLGGAAGGETDRSTAQDRSENKAFSKDQTF
Ga0315282_1000881713	F042698	GGAGG	MGISVSSSSPDILVDNRGIMPDLVTLTITGLTAEASNPVPHGLPRTPKRVWFTAVGSGVNAPNCSLDTSTVAAGYDATDLYICTPAGVTSVLAHVEY
Ga0315282_1000881715	F083583	AGGAG	MSDITAIDQSYHLNYNIEIGKFTCLAADSSVYADGCDVPSGANGQFLGVAQESILPDAMADYAGGQYTLVSGSAWPANAIPPSALGRNIRTRIFGITRVVASGAIGRGAYVNIANAQGEVKAVSEAVGTYINVVGIALDAAVNAGEVIRVLVMPFTYKA
Ga0315282_100088173	F007097	N/A	MSQLTLSAIPGFFDLGDSAIAAGQPLTDDSLLKISHNAKFGAVRSKVIFMGFYAHGNTVPTPIDPDDGYAYTRAECQFVWMIYSNRAPASGFVPGQASPPAQSSSQPGTLYNFPGGWDVNDATGLVTFRTSYWQNGSEIVNNDGIIKVYAACLRLSLNSLN
Ga0315282_100088176	F016487	N/A	MIQGNQTWTQALAQLQKQAYYVVEIPDFAIAIASFPPSSQVAATLAGYGVTIYGVGAYGT
Ga0315282_100088179	F010661	GAGG	MAKSNNIATAADFRQLAESAAWTDPERVQLPKSGLGVIVRRPTKFYWALRRSAWPRELREKLDLIGVGVSAELTAEEKLLLVREDRQMLNEALVDPKPCLAPGSTQFDPNWLPQEDAEFILMYLRGQVLANGQDLGTFPGGEPGHPEGSGGHGAVVRENPQRVVVPRGGSLAG