NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315282_10003181

Scaffold Ga0315282_10003181


Overview

Basic Information
Taxon OID3300032069 Open in IMG/M
Scaffold IDGa0315282_10003181 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29580
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3581Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024946Metagenome / Metatranscriptome203Y
F057169Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0315282_1000318111F057169GGAGMKLDWARQTRKIWPLALLILIPPSAAVGVEQTREAIFQYAGGSEKIEIDCAGKLEVSLEGLTFKCPTGSVGMPFSTITLMQFRPDVSPRVRKLKLKWSTYPTILIAGKQNRYFTVVYRIRGVTHVVVLRVDPLSMRPYLAEIELKSGKRVEVMPYGDYS
Ga0315282_1000318119F024946GGAGGMAHTFGEQELADYLFDRIIVNCPTCLDTKCLRVACLKVAEELLEDAEITYKLAPISDGGA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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