Scaffold Ga0315282_10003047

Overview

Basic Information

• Taxon OID: 3300032069
• Scaffold ID: Ga0315282_10003047
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30293
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3581
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002606	Metagenome / Metatranscriptome	543	Y
F019272	Metagenome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315282_1000304728	F019272	GAGG	MRFRKSLTLLLLAMGLVFALSAWAQQKPFTRDRVQGLVRDGLGDESGAKLIEQRGTDFALAEDFLQSLKAAGASEAFLKALRAAKPPEPASAKKPLNQVQVFALLAGQVPSHRVAMLPNQRGTSMRRPHGQDCTDRGYPLIYHIHREVLYLTRPFYE
Ga0315282_100030478	F002606	GGAG	MRRAKGVVINGVRFRPGEVDWEDAHSVTRDKLPDFDVMRQGGQYVGPKITSTGLIGKIGKYLLVITEKDETLTEFDYTLIPLRPKVQIRYH