Scaffold Ga0315282_10002637

Overview

Basic Information

• Taxon OID: 3300032069
• Scaffold ID: Ga0315282_10002637
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32751
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3581
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022810	Metagenome / Metatranscriptome	212	Y
F046143	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315282_1000263720	F046143	AGGAG	MNIRKHLGASLLSVALLLAAGIPGLAANARFVTLRHDAVLSGTSLSAGEYNIRWETHSPEASVQFVRRHKVVLSTKGKVEARNKSYDRDTVVFNVAADGSFSLVEIRFAGSSGVLVFNQ
Ga0315282_1000263722	F022810	AGGAGG	MDMRKRLAKSMLSVALLLASGVPAIANGSRHVTLRHDAVLSGTSLPAGQYIVSWAVHSPQPKVEFTQGRKVVLSTQGRFEDRGQKYAADTVVYKTASDGTLTVSEIRFAGSSEVLVFNR