Scaffold Ga0315282_10001992

Overview

Basic Information

• Taxon OID: 3300032069
• Scaffold ID: Ga0315282_10001992
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38277
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (96.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3581
  • Depth (m): 87

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030143	Metagenome / Metatranscriptome	186	Y
F056343	Metagenome / Metatranscriptome	137	N
F058725	Metagenome / Metatranscriptome	134	N
F098715	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315282_1000199210	F098715	AGGTGG	MADTIKVQVMQKLSEVLGAIPELGSVHRWQGSPTDLDRVKLPALFFWDEEETRDKRNRLAMGTLKLYVAVFIRLSPSGAASFHDTADNLQGKFHNALIGTAGLKGLVENLQEDRVWKEFPNDQYGVLFMSFTLTYGHAWGDAFSTTY
Ga0315282_100019922	F058725	GGTGG	MGDRLKVPFLAGIQGGGVMTFVGTVINQAVYWLLEAIDPRPGLGPWPPVGRLQRPRYRVSPIRFGTGFLYGIRIPYGGIVRWHPASEVNSGLTVTDASKHAVNIYLAPKRPPLIRYGMHYQCGEVKYGQESGLCDRVTVKAVLG
Ga0315282_100019927	F030143	AGG	VSQGHDLDRLLDSYPALVVKGFLAASQVHRRRLLTEQVVALTVAVTGALDLSLNQGKGKVLESWIEEVSGEDQGEPPLRRPKMSDRAISFFTAMPRRNAKVKLRI
Ga0315282_100019928	F056343	AGGAG	MPEPITDSQVLSIYLAEEQINGFTVKPWTIKQLLLVMPILDALVQEFKTQGVTLDNLGEVFEGQGLAAAKDIIQTILPRLPEFLSVTLRIDLAQAEEIDLGLGLQLAVKVLRMNVDHLKNAFGLIMSQVGVLIGPEATS