Scaffold Ga0318514_10422472

Overview

Basic Information

• Taxon OID: 3300032066
• Scaffold ID: Ga0318514_10422472
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 708
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019070	Metagenome / Metatranscriptome	231	Y
F031725	Metagenome / Metatranscriptome	181	Y
F044845	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318514_104224721	F031725	N/A	AAEGRKRIDELLHELADARTAAMITGCEAAALRSRLEILTDERRRPWWRGWFR
Ga0318514_104224722	F019070	GGAG	MQTMLNIALAAVGFALAAIPAFAVEMPTDGSKNFTSPTDAPSYFTSETLPESARFDRAASFDEEDVGATTPDVGDTTQYDRHTSPHESARHSPGKSKGRSASAHYAK
Ga0318514_104224723	F044845	N/A	MTSGASVTLHALEAALIQCHATSTRDGCVPLSVHATMAECRALAREYQKFDTRALGVTGLPAVVS