NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318513_10216448

Scaffold Ga0318513_10216448


Overview

Basic Information
Taxon OID3300032065 Open in IMG/M
Scaffold IDGa0318513_10216448 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)925
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000824Metagenome / Metatranscriptome874Y
F003256Metagenome / Metatranscriptome497Y

Sequences

Protein IDFamilyRBSSequence
Ga0318513_102164481F000824N/ALLLGYRDNMRVEVESDVTVAAKTVADLRALPTWPEGLVLDIHVDLDPRLSVVRVERAS
Ga0318513_102164482F003256GGCGGLLRTSGWWPMRHVIKIAALPLLPLVLGGHARGAENEEKVITLSCEGTLTRTYGADKPSDPEPLQKTGAVVNLDEQTVFFLGYVVPIESVDHASINFGARQTVDYGFSIAITGHIDRASGRMAITTATLDPTKPNDPS

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