NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318510_10389800

Scaffold Ga0318510_10389800


Overview

Basic Information
Taxon OID3300032064 Open in IMG/M
Scaffold IDGa0318510_10389800 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)592
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000277Metagenome / Metatranscriptome1389Y
F028012Metagenome / Metatranscriptome193N

Sequences

Protein IDFamilyRBSSequence
Ga0318510_103898001F000277N/AEGDRAAKIIKEAVGIESDDVVNYTFPKDWPTDREVRARIIGDSLQTEARYLA
Ga0318510_103898002F028012N/APVQGQQPSADQLKAYAQNAVKIISGDKQRIEAFCELNDLTNQLDQAVEEKDTRKAEELSQKGEELLRKVGPEFAALGDGVNSVNLSSQDVREIGSIIGNLNEYCNAPQQSALSPRI

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