Scaffold Ga0318533_10033394

Overview

Basic Information

• Taxon OID: 3300032059
• Scaffold ID: Ga0318533_10033394
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3353
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043533	Metagenome	156	Y
F089291	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0318533_100333943	F043533	AGG	MDGEVKSQAETDEDILTFDIPDDALERAANAEQAYTLVHCTHPWHQCPWPQ
Ga0318533_100333945	F089291	GGA	MIKAAEYRAWAEESLEWALIATKDSSRAAFIQWAETWLELASRAERLTALIEDRSKEPTPTARKRRRSSVRPRFDQLAFDFAKI