NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308421_1054495

Scaffold Ga0308421_1054495


Overview

Basic Information
Taxon OID3300032057 Open in IMG/M
Scaffold IDGa0308421_1054495 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1099
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F001381Metagenome / Metatranscriptome709Y
F053114Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0308421_10544951F053114N/AIVEWINSLVSIWNGWMDALMHPAQAMPSVPALRWIVDWLGGIADYTRLMYMLVDYVAYASVVQQALAAQLTIVTIGLAFRAWLVIRRIVLVS
Ga0308421_10544952F001381GAGMQYVVATLYVLVWLALAALAALVLPRWALPAALVQLAVAYVMLRAFWLTVARDDDGA
Ga0308421_10544953F000642N/AMQEMSVALALCAVGAAIWYMRRRDAGAGRVRGWLVLYDDLGGWRVLPAVYGDSGIVADGVTYPASLPALRAGRELVWIARCDAAALIEHQALERARESAALASLWRGGGQWIDLLRVLGVVLPAVFAYFTWAQVSALQGLVAQILALVGD

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