NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308421_1009391

Scaffold Ga0308421_1009391


Overview

Basic Information
Taxon OID3300032057 Open in IMG/M
Scaffold IDGa0308421_1009391 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3736
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N

Sequences

Protein IDFamilyRBSSequence
Ga0308421_10093912F000855GAGGMDWLEDAISKIVAWLDQVSASIHNSIIGWINGLIDIWNGWMDSLLHPAQAMPSIPQLRWIVDWLGGIVDYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRIVLVS
Ga0308421_10093913F001381GAGMQYVIATLYVLVWLALAALAALVLPIWALPAALVQLAVAYVVVRASLLSASDSDGA
Ga0308421_10093914F000642GAGGVQEISVALAICAVAAAVWYMRRREAGAGRVPGWLLLYDAVGGWRVLPASYGDAGVVADGVTYPASLPSVRAGRELIWIARCDAAALIEHQALERARESAALASLWRGGGQWLDLLRVMGVVLPSAFAYFTWAQVASLQSLVAQILALLGER
Ga0308421_10093915F002978GAGGMSVRDWRVTIVPWADRRLWFVQARRGRRVVWGVVYDAADPESVSFARRAIATLRNAGADCSALPSPLPGSPAPGT
Ga0308421_10093916F004024AGGAMRSERDYLRQPSSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPIIESAAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR
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Institute for Fundamental Biomedical Research
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