NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318575_10504623

Scaffold Ga0318575_10504623


Overview

Basic Information
Taxon OID3300032055 Open in IMG/M
Scaffold IDGa0318575_10504623 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)614
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009248Metagenome320Y
F053718Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0318575_105046232F009248N/AMNALATLETGLLLGLYALLAGVWGVLWALSQFRQNVIFRRSAAAAFGLHTLVALGIILWTPLGFGWKCLIVGSSLVFLALPPMTWRLLERTHQNEVSEHDRKPSQHSRRVVARV
Ga0318575_105046233F053718GAGGMIGNLLNILVGLWLAYSAIFANPAGAMNNVALAMSAIAVIVFAVWARQSDSLGWQSGTSTVLAAMLLAVAV

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