NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318575_10278151

Scaffold Ga0318575_10278151


Overview

Basic Information
Taxon OID3300032055 Open in IMG/M
Scaffold IDGa0318575_10278151 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)846
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001088Metagenome / Metatranscriptome782Y
F022273Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0318575_102781511F022273N/AMQRSFKLATQAGEPSLDHWAFAFQAAMALIVIVLSTLTVAALEISLLSDESLSALEAVIG
Ga0318575_102781513F001088GAGVIEIKLDRLIDDMRLLRSQMIAFDKQLKGIEASLKPSEQQPESKSRPWFAAAASATARTVLILFAVGRG

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