NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318575_10062229

Scaffold Ga0318575_10062229


Overview

Basic Information
Taxon OID3300032055 Open in IMG/M
Scaffold IDGa0318575_10062229 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1740
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000427Metagenome / Metatranscriptome1151Y
F007961Metagenome / Metatranscriptome341Y

Sequences

Protein IDFamilyRBSSequence
Ga0318575_100622291F007961N/AQLAFEAQFRKMSIGELVGELLTAIVKRDDLFQQLEPNSKQP
Ga0318575_100622293F000427N/ASSVRGRRAKFTPQAIEKIKEFVGEGISRDEIANRLGVTVGSLQVTCSRLGISLRRIIFPSHSERRTADVRLGSVGIAHVREQKEVSQPEAYAAPGAKFAITMRHRGKERTTDIPLSSAAIETLALEAMSRDLDIAELIGQVLVAAINKDMIQKILR

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