NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318570_10130495

Scaffold Ga0318570_10130495


Overview

Basic Information
Taxon OID3300032054 Open in IMG/M
Scaffold IDGa0318570_10130495 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1116
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007634Metagenome / Metatranscriptome347Y

Sequences

Protein IDFamilyRBSSequence
Ga0318570_101304951F007634N/ALTGAAAGARFNARLADALIAVVNEAVAEDGEQQAQRRLHYDALKNAIEPSPTARRRFEAKGEHAYAQRSAMSAMIATNHRDVVKLPWNDRRFSVITCGKRMTKENAAKIRAWMEVPENIGALYQALLDTPAVPMTEFDPFDEPPPFAGRLEMIGMGRSRLEDSYEAAIDALEGCPLFTMTQVQKLINYVGAYQVGGGSGSDKARHTVAKNAYRLRERDEADNRIRYRKRQEVIYARTRAERERWREADTAMIVAALDRAEERVTQVINAERDVLADFMRARNLNSTPETEPEKEPEGLQD
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