NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315284_12009301

Scaffold Ga0315284_12009301


Overview

Basic Information
Taxon OID3300032053 Open in IMG/M
Scaffold IDGa0315284_12009301 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)586
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS1(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.508Long. (o)-110.3268Alt. (m)Depth (m)93
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047054Metagenome / Metatranscriptome150N
F058143Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0315284_120093011F047054N/AGVNLMDNIHSQNLIDDSLKSTLRPRMKDRTKVISAALQYVLNNDLVNKSYLEKIVQELEEMNE
Ga0315284_120093012F058143GAGGMILERTADLQILYDDKETYYRISYNDEFQYVSWFRREYGILYPVDAVLYDILTQKYFDFHKCNK

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