Scaffold Ga0315284_10340459

Overview

Basic Information

• Taxon OID: 3300032053
• Scaffold ID: Ga0315284_10340459
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1873
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014589	Metagenome	261	Y
F039986	Metagenome	162	Y
F102704	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315284_103404591	F039986	N/A	LTGEQAQSAINLALNTGALTATEYKNLTGSLATAQSMDDVYKAFGTPQAVAALDPNYGFQLGVGKTLAQAQSNSTGVQALVDKIAAENGGRLPANFSVGALATANKVPFQFGQSVYDKSYMTDANQKINTLAKTQTSPFNFNPANIYQQPIVAGQMRELFPAFGESKRLAQGLINQRPTTQSIVNMIQGLPADASLGLNTMQNNVVGAPTSLNNVLGMIGK
Ga0315284_103404592	F102704	N/A	MNYQELRDIVGGSNPQAASYQDIISGIQSQYRPQTQFAPTTSLLDMIGSQLPDQPRIAYGSLLQAQPRVLPTPMTAIKNPDAAASLDSGVINLGNLDTGKITGNTAIDNTLVYNNDFTKNTGGINLDTSGVNSGLFGTNVTGTDIANIAGTVAPIAALAGNSDLVKTAIALNLIGSAADLKTDQDVINLGTKIAMLAAGPAGNALAAGLGIASDNTPLTVNALLGLTNPTLSLVNSIAGNLTGYSLGDIVNGLLNAPEGSVSEYGLLGAANLAGTADASRKRAGAAYDSMDANTLRVLAELGDQEAIATIRSMSSGGTSTFNPISDLGTAKGNSYFNLFTPVAGSGGGGGNPNLNYWNRAINAE
Ga0315284_103404593	F014589	AGG	MQNDKAVLAQWAKNLLNDDFFKEVIDNLKKEQISVIINTS