Scaffold Ga0315284_10241098

Overview

Basic Information

• Taxon OID: 3300032053
• Scaffold ID: Ga0315284_10241098
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2311
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001150	Metagenome	764	N
F015091	Metagenome	257	Y
F016261	Metagenome / Metatranscriptome	248	N
F016270	Metagenome / Metatranscriptome	248	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315284_102410981	F016270	N/A	KLGKADGRKASLAFIVKCLENADHLGIQLVIDYAMQRSWKCDRGTWQPLPSVEIADWYHVEIDPHVANDPIIAKQRWQAVFGVSPQVAPPSA
Ga0315284_102410983	F016261	AGG	MTENIDPRTDPQFLALKHVMDEIIQNKVPIRQPWELAARSTLRAIQHEIDDRNVLDDAELIDVLNQTRIEIKYLLSIITDLDERVKERDAEVSRLERWAHRAN
Ga0315284_102410984	F001150	N/A	MRIAMVESQASANAKWTPQQQMQVDNAIRKMARMMPRFTADQVWYELGASFPVTKGMTARLLVAQRNGVIKNTGEITFAERGGKHDHAQRLTIWQSL
Ga0315284_102410986	F015091	GAG	MSDVQQLTQIMQALSMVLAMPDFLGKDDVEKHLRWATKSYAERIYRQSNKDK