Scaffold Ga0315284_10220822

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315284_10220822

Scaffold Ga0315284_10220822

Overview

Basic Information
Taxon OID	3300032053 Open in IMG/M
Scaffold ID	Ga0315284_10220822 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2436
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (10.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.508	Long. (^o)	-110.3268	Alt. (m)		Depth (m)	93
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016246	Metagenome	248	Y
F025916	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315284_1022082210	F016246	N/A	MFPLIRRRLTHAEILAGFAELLSAVKAMQFWEPYP
Ga0315284_102208227	F025916	N/A	MGARAGKYGGGSVSTHLTRPLLGCRLRDCGALDCPVCAGAEAARIYREQAECEHAEHDHGICLACGADITDELAGQAEDAADAAQDR

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