Scaffold Ga0315284_10120278

Overview

Basic Information

• Taxon OID: 3300032053
• Scaffold ID: Ga0315284_10120278
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3488
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034110	Metagenome	175	Y
F057210	Metagenome / Metatranscriptome	136	N
F100413	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315284_101202781	F034110	N/A	QCFEIENSTNCFGHVPKRTSAPDYLRAKRKALQIAKKYKDTPLYLHLKSNL
Ga0315284_101202782	F057210	N/A	MKTIDTHINKVMFEIDEIIHQCNNYTDPTKLDKLTLDSAKILVKELHLCILRHTYRVDNIRHNYDTLEDLL
Ga0315284_101202789	F100413	N/A	MDGLTLKRTPDAIKWIQDSLESSDIDYVLKHGTYTTQIEHSMGTIKLMLNNFQNRVFCASQMVKKDCKNSENGQEIMKSTHYKKNYDANPKIETIRYDTCFNIDLSSAYAYCLFNSGLITKKTFNYLLKLPKMERLTSVGMLATSHVKYFYSGGKCVDFKPYREPTAQIFFYLIDEINYLMQDIKWMLGNDFIFYWVDGVFMKPTTPKSKIDKVENLLISLGYKYKYEKVENFSVNRIQDKVIIDMIKNDESKRYEFST