Scaffold Ga0315284_10113057

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315284_10113057

Scaffold Ga0315284_10113057

Overview

Basic Information
Taxon OID	3300032053 Open in IMG/M
Scaffold ID	Ga0315284_10113057 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3615
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.508	Long. (^o)	-110.3268	Alt. (m)		Depth (m)	93
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006016	Metagenome	383	Y
F047492	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315284_101130572	F006016	GAG	MNTTTETQALVDSLTSDIDSLYVLDQQAKALEIKIKAIKADIANKYCEGKHEGQLHSVTVSLVAVSGTVDYKKLCTVHGISEDVQNTFRKEGRADIRVTPAK
Ga0315284_101130579	F047492	GAG	MNIFEQGKTLYTQNEFNQALTEAKAEIMSIAIQTTRQAIFLERRACAQLLMDMADADDEGAVCTALRNAAEEVMNRIPAQRQ

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