Scaffold Ga0315284_10103706

Overview

Basic Information

• Taxon OID: 3300032053
• Scaffold ID: Ga0315284_10103706
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3799
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011669	Metagenome	288	Y
F019103	Metagenome	231	Y
F039482	Metagenome	163	Y
F054585	Metagenome	139	N
F088903	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315284_101037064	F011669	AGGGGG	MNDNDDYELANWMHLIATCILVLFAVTGIAGLAGYLWGML
Ga0315284_101037065	F039482	AGG	MSDKLELTEHTVYILNGIKLLPHYTLPCYVTPGFTRLTPMKLWTVEQLKDAGAVESSAFLWPRHTLAAGG
Ga0315284_101037066	F054585	GAGG	MNWLAAAIIALVLGTSHYLDWPSEFEAAQDAAAAYRAARTEQERQQRFEAAAQAMCGENAAWKLLADGSIQCFTHRGFKTRKVTL
Ga0315284_101037067	F019103	GGAGG	MNLSPRIQPIQEDFKGLFNHRFETDGGLVLDCYLSYEAEERETRDEPGSPADMQLVWALVGGIDIGELLEDLPDLAETIEAEALSDLEDQIKDAALERGQA
Ga0315284_101037069	F088903	AGAAG	MKATIKNAKLLCAQKGGWGSFKHRLMAQLGIPANQFDKWDVPINWQQAFCRANGRELFNKATP