Scaffold Ga0315284_10084851

Overview

Basic Information

• Taxon OID: 3300032053
• Scaffold ID: Ga0315284_10084851
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4273
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017612	Metagenome	239	N
F041003	Metagenome	160	N
F082589	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315284_100848511	F017612	N/A	SIPYTDMHIGDLYEETLAKYSSGQLKKDGLIMLPEEALQVFINKAREEGFTDNMIENSAEELLYDLEDVEENKYKQYLEEKE
Ga0315284_100848515	F041003	GGA	MKAWTPPDYLSLPKPPRHCKYVWLRFDIKTKKFKYPLVRHKQLKNRKRFPFIYIKHYGKCVGIEGLTLAKVKI
Ga0315284_100848517	F082589	GGA	LVSLLKNQQKGNVMQNDKIYEVASDLYFYFIDLYGAREQCVIENDDYSENTELGRELYYQIEDELINNVQPTKN