Scaffold Ga0315284_10059019

Overview

Basic Information

• Taxon OID: 3300032053
• Scaffold ID: Ga0315284_10059019
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5249
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009142	Metagenome	322	Y
F019102	Metagenome	231	Y
F073252	Metagenome	120	N
F102646	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315284_100590191	F073252	N/A	TPATITYVARADTTARTAFDAKFYDILEQLYRSPDLASYLTTNSNITFYVAKVTGDNPAVISQNRTWSRAMTLDITATAKK
Ga0315284_1005901910	F102646	GGTGG	MASLVIGSAISSKVLQRQNFNKEPNGLETIIEAYAIQTANRDAVVPEKDTLHSAFSSSTKKYSRMVVESVATEEQDGGITQMLVTFVGLTTLTGLPPAIVRLIPTEGAGIFGPPLTIEAEFVTDVSESQF
Ga0315284_100590192	F009142	N/A	MSNSVQINVEDALEDLLVGISGLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVSVTIDYSDTAAKVSQEAFDAEYCLIFEAFYSETPSLFTKIQNNISGTRVYTARITGQTPTIRTAKRAWQRGLKMSLICTPQ
Ga0315284_100590197	F019102	N/A	MSISLDEELNSAFISPDKEYMGEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYMHIQIAKGRKEAIKLAWNRDLFREKIMDFIEGKTEADRDAATQIVSNILDEAQKGKVEAIPAPHQGELGNA