Scaffold Ga0315284

Basic Information
Taxon OID	3300032053 Open in IMG/M
Scaffold ID	Ga0315284_10019247 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032053 Open in IMG/M

Scaffold ID

Ga0315284_10019247 Open in IMG/M

Source Dataset Name

Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9647
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (19.05%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9647

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (19.05%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.508	Long. (^o)	-110.3268	Alt. (m)	Depth (m)	93
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.508

Long. (^o)

-110.3268

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002287	Metagenome / Metatranscriptome	574	Y
F004838	Metagenome / Metatranscriptome	421	Y
F005775	Metagenome	390	N
F070805	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315284_1001924712	F004838	N/A	MITAQDKILHVANKLGLTSLKDMQASTGAVYDVDTDLSGQIFSAATRHQFPSVTNLTDNQFEVNEALLVENITFFCKDEAGLITNFQNLYNSNAVILFDLVIGNKRVMKDTPVFAAGSPYTFANVGQQGSLDAGNVVSKYLPRNQVYMEGAGVLIPPQVQWYVQYTIYNVVTGAIIPPTAGKALGCYLFGTKVLLNFNTSI
Ga0315284_1001924713	F002287	N/A	MATQPQKLAYVDSKLGAPNGGQQTTRILFNTIENPGTTSALTFFRNFQGLTNGQTNLTQNRLDSMESMVIKTIWLAQYTSAGALQSTGGFVGQTVSIIVGNQTVVKNLPIAFNQGIAGQAFDRLHDNGGGILDTSNTETANFQRFQPCEIRLLTDIVIPPQVAFEVRIDSNSGVYGSGAVVCALSGYGKIFSAGNSF
Ga0315284_100192476	F005775	N/A	MAKQRPIYTKAQHQIVTPAFVEKKIQLHKSIKWTTKDDRELFIMASGSVTRYVPKSEHNSQAPIGFFNLQMGHYNKISIHTRDFAQLAEVFEQITMFLKNNAGKLDTVVTKELDTYTTHHLKNLLNTNEQP
Ga0315284_100192478	F070805	N/A	MYLQLAGHTPLHNALNPLAPGATPYSYDAMYLGQGQDIILPDALYKTSPGGFVDALKKLKKLYEYFQDGKKPTPAVVAARAATAQMPSGGVQPASPIQPMNGIGATIALLTQAIPYIVSILGTISATLVNNTITNKYNQNAYNVQALNTMNLSQLNLQIQRLDQDIALSGGILKIINLMALSQFRIVYQQRFDRISGFGLLSNLPGWVLPAALGLGAYLLLRRK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315284_10019247

Overview

Ecosystem & Geography

Associated Families

Sequences