Scaffold Ga0315284_10004887

Overview

Basic Information

• Taxon OID: 3300032053
• Scaffold ID: Ga0315284_10004887
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19061
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036462	Metagenome / Metatranscriptome	170	Y
F038776	Metagenome / Metatranscriptome	165	Y
F071164	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315284_1000488719	F038776	GGAG	MKKDNINYNELDSRLNKTIYRLADVKDRLEVIGFDIVRFKDSDKSADLWQVQSADDGDYIVAMYQPDEEEKTAALWDVTVSKTAGNLQISYKGDPIVRIASSKLGVPASEVHKVPEYLPSKLAENKKLVKALLNELQESAKKEVLKKYPELV
Ga0315284_1000488722	F071164	GAGG	MRISEMLQAMASWLESPNNEALLLAEYHDDSMRVVAENCILAAALLKNAAEQVSDMEPPEESKITDESIEELANLASALDASGDPALKKQASVLDELLLSIAAPPNAYAMRQDLQDRRIEDLKKKYEQPRKELHETNKIADSEKAIDKSEMTKKYTILEAPLSARTCPDHPGVQIARVGEHMWQCEMDKKTYDYETGYTLNNGVKVPGGSVEQQTQGISVPTHSVFDTREGRLGYNNA
Ga0315284_100048876	F036462	GAG	MVKQITLGDCLGSQSEEKFADFDLTSVQLVLDALANTDAIDLSHAEYLQQQALRGADIITEFLAKIVKTVGYLETKVNSVKNRVCLEYQAPEGTRTTTDMKIWAGNSSPEVEAVQIRLASAKASKMYLEHKFDLMVKSHHHYKEIASGLRRTVLGYAPSEKSAPGWD