Scaffold Ga0315284_10003172

Overview

Basic Information

• Taxon OID: 3300032053
• Scaffold ID: Ga0315284_10003172
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23344
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (26.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Pithoviridae → Pithovirus LCPAC404 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.508
  • Long. (^o): -110.3268
  • Depth (m): 93

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009382	Metagenome / Metatranscriptome	318	Y
F010014	Metagenome	309	Y
F018866	Metagenome	232	Y
F028091	Metagenome / Metatranscriptome	192	Y
F046855	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315284_1000317214	F046855	N/A	MSLPAAFVGQQATAMMAISPLDGFLQIFNNNPYFIGLMMLILNLGGRFISLEVTKKQEQFLQHPWVRRVLIFTVLFVATRNIWVAFWATLTFVLFLGYLFNENSALCLFGNEGRTGSTCAEGGPAPGEEMTPEEKEILQRLSAKAQRYQAAGEKGKKTSTKRPDQENLERLLQRNHNDPNLKDTGEPADEEDVLHTDIYAANLTLLKQ
Ga0315284_1000317215	F028091	N/A	MKTPAWLDNLSIHHSSDGVFRVIVVILASVFLVNYSSLFEERYSEKLTELYIHPWWRILVVLLVITSAMWCPRVGIIVAFIVFFYLSDMNTLITPFTNY
Ga0315284_1000317222	F010014	AGAAGG	MAQPVFPDKHTASAYYAFPQPQFITRTRREFDTIDTINARQFEHWQTDGKFGYNNRPDVNSQAPFYDMLPNDSRMNDRSYRSQPRFDASGARGVQNPYFNKYDTTSDARNMTRELRASVYEDKNTGYLDESGKLLQRNFDSRWLNPTVAIQQAAAAEELRPKMDDIRMFYHNKPVSDS
Ga0315284_1000317224	F018866	N/A	MDIHRHKTQKKPVSEPPATEETFKVLLEDSAREAYMRPWHRIERGLRLNRLRIYVEDVAPAHNMTKEEKESFFTYLQRALDKKLLNTLKVVQYSQETQRITAIKGLEVNRQSNGAMRWAFVTKKPRGAEVGTRKKKKDDVLEHMPKIEESLT
Ga0315284_100031724	F009382	N/A	MSDLHEIGFSGNTHPNLFTTPEFGTEYLAARKAALPPAKDVYPARDDRYPAYAGPMADGRLVTDYRPHCSKNIRPDEQYYTKLWMIHHTDEMMDESRRRQVEWSGASLPLANTVPPPADIVHSNAFYSEVNPTHIPTGIGIERANSAAPMLFGTFQYEPTMQEIRNNRKNIALTTRQEGGRNSIRGVIPRPNY